From fa34013099302201f846bce6a507c9c25b24d7f0 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Richard=20Tj=C3=B6rnhammar?= Date: Wed, 8 Mar 2023 20:15:25 +0100 Subject: [PATCH] Update quantification.py --- src/impetuous/quantification.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/impetuous/quantification.py b/src/impetuous/quantification.py index 30f1ce0..9c622ba 100755 --- a/src/impetuous/quantification.py +++ b/src/impetuous/quantification.py @@ -1643,7 +1643,7 @@ def groupFactorAnalysisEnrichment ( analyte_df , journal_df , formula , grouping print ( gid ) Xnew = dimred.fit_transform(group.T.values) group_expression_df = pd.DataFrame([Xnew.T[0]],columns=analyte_df.columns.values,index=['Group']) - cdf = pd.concat( [group_expression_df,jdf] ).T + cdf = pd.concat( [group_expression_df,journal_df] ).T cdf = cdf.loc[:,['Cancer','Group']].apply(pd.to_numeric) linear_model = ols( 'Group~' + formula.split('~')[1], data = cdf ).fit() table = sm.stats.anova_lm(linear_model,typ=2 ) -- GitLab