diff --git a/src/impetuous/hierarchical.py b/src/impetuous/hierarchical.py index ca7531a15918291dd1346183b428387284b470a1..f60b0f23e57d697baf13f94009648332997d2423 100755 --- a/src/impetuous/hierarchical.py +++ b/src/impetuous/hierarchical.py @@ -247,7 +247,7 @@ def groupFactorHierarchicalEnrichment ( print ( gid ) Xnew = dimred.fit_transform(group.T.values) group_expression_df = pd.DataFrame([Xnew.T[0]],columns=analyte_df.columns.values,index=['Group']) - cdf = pd.concat( [group_expression_df,journal_df.] ).T + cdf = pd.concat( [group_expression_df,journal_df] ).T cdf = cdf.loc[:,['Cancer','Group']].apply(pd.to_numeric) linear_model = ols( 'Group~' + formula.split('~')[1], data = cdf ).fit() table = sm.stats.anova_lm(linear_model,typ=2 )