From ff3640a6d784f284f2fb4c41b8a5b69b1a4cff0c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Richard=20Tj=C3=B6rnhammar?= Date: Wed, 8 Mar 2023 20:19:06 +0100 Subject: [PATCH] Update hierarchical.py --- src/impetuous/hierarchical.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/impetuous/hierarchical.py b/src/impetuous/hierarchical.py index ca7531a..f60b0f2 100755 --- a/src/impetuous/hierarchical.py +++ b/src/impetuous/hierarchical.py @@ -247,7 +247,7 @@ def groupFactorHierarchicalEnrichment ( print ( gid ) Xnew = dimred.fit_transform(group.T.values) group_expression_df = pd.DataFrame([Xnew.T[0]],columns=analyte_df.columns.values,index=['Group']) - cdf = pd.concat( [group_expression_df,journal_df.] ).T + cdf = pd.concat( [group_expression_df,journal_df] ).T cdf = cdf.loc[:,['Cancer','Group']].apply(pd.to_numeric) linear_model = ols( 'Group~' + formula.split('~')[1], data = cdf ).fit() table = sm.stats.anova_lm(linear_model,typ=2 ) -- GitLab