未验证 提交 6f9df439 编写于 作者: rictjo's avatar rictjo 提交者: GitHub

Update hierarchical.py

上级 0b416b36
......@@ -247,7 +247,7 @@ def groupFactorHierarchicalEnrichment (
print ( gid )
Xnew = dimred.fit_transform(group.T.values)
group_expression_df = pd.DataFrame([Xnew.T[0]],columns=analyte_df.columns.values,index=['Group'])
cdf = pd.concat( [group_expression_df,jdf] ).T
cdf = pd.concat( [group_expression_df,journal_df.] ).T
cdf = cdf.loc[:,['Cancer','Group']].apply(pd.to_numeric)
linear_model = ols( 'Group~' + formula.split('~')[1], data = cdf ).fit()
table = sm.stats.anova_lm(linear_model,typ=2 )
......
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